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GAGE package
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0
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1.3k
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GAGE for non model organism
gage package
gage
7.4 years ago
melkile26
• 0
1
vote
2
replies
1.7k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
7.5 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.4k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
4.6k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 3.8 years ago by
Helen
• 0 • written 7.9 years ago by
tarun2
• 0
2
votes
4
replies
2.7k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 8.4 years ago by
Gordon Smyth
53k • written 8.4 years ago by
sup230
▴ 30
1
vote
0
replies
1.8k
views
DESeq2 - GAGE workflow
gage package
deseq2
8.4 years ago
sup230
▴ 30
0
votes
2
replies
2.2k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 9.1 years ago by
Luo Weijun
★ 1.6k • written 9.2 years ago by
Michael
• 0
1
vote
2
replies
1.9k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
9.4 years ago
joanito.liberti
• 0
0
votes
1
reply
1.3k
views
Question on Gage
gage package
path.ids
RNA-Seq
9.4 years ago
rl1385
• 0
0
votes
0
replies
1.3k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
9.5 years ago
smt8n
• 0
10 results • Page
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Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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