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GAGE package
•
reset
0
votes
0
replies
1.2k
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GAGE for non model organism
gage package
gage
7.3 years ago
melkile26
• 0
1
vote
2
replies
1.7k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
7.3 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.4k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
4.5k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 3.7 years ago by
Helen
• 0 • written 7.7 years ago by
tarun2
• 0
2
votes
4
replies
2.6k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 8.3 years ago by
Gordon Smyth
53k • written 8.3 years ago by
sup230
▴ 30
1
vote
0
replies
1.8k
views
DESeq2 - GAGE workflow
gage package
deseq2
8.3 years ago
sup230
▴ 30
0
votes
2
replies
2.1k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 9.0 years ago by
Luo Weijun
★ 1.6k • written 9.1 years ago by
Michael
• 0
1
vote
2
replies
1.9k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
9.3 years ago
joanito.liberti
• 0
0
votes
1
reply
1.3k
views
Question on Gage
gage package
path.ids
RNA-Seq
9.3 years ago
rl1385
• 0
0
votes
0
replies
1.2k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
9.4 years ago
smt8n
• 0
10 results • Page
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Replies
Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
insuraasanaa3scetaxrealty
• 0
Lamento que el acceso a los paquetes BrainArray esté fallando; cuando ocurren estos problemas, es util contar con recursos alternativos bie…
Comment: Getting a large intercept with DESeq2
by
Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo
by
shepherl
4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer
by
shepherl
4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Answer: Error installing Seqinfo
by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Votes
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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Gordon Smyth
53k
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James W. MacDonald
68k
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anjanaram1
▴ 10
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Stephen Piccolo
▴ 600
Popular Question
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Maria Doyle
▴ 100
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